Enumeration and Online Library of Mass-Action Reaction Networks - Quantitative Biology > Molecular NetworksReport as inadecuate




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Abstract: The aim of this work is to make available to the community a large collectionof mass-action reaction networks of a given size for further research. The setis limited to what can be computed on a modern multi-core desktop in reasonabletime < 20 days. We have currently generated over 47 million unique reactionnetworks. All currently generated sets of networks are available and as newsets are completed they will also be made available. Also provided are programsfor translating them into different formats, along with documentation andexamples. Source code and binaries for all the programs are included. These canbe downloaded from this http URL. This library ofnetworks will allow for thorough studies of the reaction network space.Additionally, these methods serve as an example for future work on enumeratingother types of biological networks, such as genetic regulatory networks andmass-action networks that include regulation.



Author: Anastasia C. Deckard, Frank T. Bergmann, Herbert M. Sauro

Source: https://arxiv.org/



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