The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway informationReport as inadecuate




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Human Genomics

, 7:4

First Online: 05 February 2013Received: 17 August 2012Accepted: 10 December 2012

Abstract

The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.

KeywordsCuration Databases Ontologies Pathways Tools AbbreviationsAJAXasynchronous Javascript and XML

CGIcommon gateway interface

ChEBIChemical Entities of Biological Interest

GOGene Ontology

HTMLhypertext markup language

KEGGKyoto Encyclopedia of Genes and Genomes

PWpathway ontology

RGDRat Genome Database.

Electronic supplementary materialThe online version of this article doi:10.1186-1479-7364-7-4 contains supplementary material, which is available to authorized users.

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Author: G Thomas Hayman - Pushkala Jayaraman - Victoria Petri - Marek Tutaj - Weisong Liu - Jeff De Pons - Melinda R Dwinell - Ma

Source: https://link.springer.com/



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