Protein Peeling 2: a web server to convert protein structures into series of protein units.Report as inadecuate




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* Corresponding author 1 LBT - Laboratoire de biochimie théorique Paris 2 Bioinformatique génomique et moléculaire

Abstract : Protein Peeling 2 PP2 is a web server for the automatic identification of protein units PUs given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews- coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from http:-www.ebgm.jussieu.fr-~gelly-index.html.





Author: Jean-Christophe Gelly - Catherine Etchebest - Serge Hazout - Alexandre De Brevern -

Source: https://hal.archives-ouvertes.fr/



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