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BMC Biotechnology

, 3:22

First Online: 09 December 2003Received: 18 September 2003Accepted: 09 December 2003

Abstract

BackgroundReverse transcription-polymerase chain reaction RT-PCR is a very sensitive technique to measure and to compare mRNA levels among samples. However, it is extremely difficult to maintain linearity across the entire procedure, especially at the step of PCR amplification. Specific genes have been used as baseline controls to be co-amplified with target genes to normalize the amplification efficiency, but development or selection of reliable controls itself has created a new challenge.

ResultsHere, we describe a new quantitative RT-PCR to compare two mRNA samples directly without the requirement of synthetic control DNAs for reference. First, chimeric RT primers carrying gene-specific and universal PCR priming sequences with or without a linker for size distinction were utilized to generate cDNAs. The size-different cDNAs were then combined in a single reaction for PCR amplification using the same primer set. The two amplified products were resolved and detected with gel electrophoresis and fluorescence imaging. Relative abundance of the two products was obtained after a baseline correction.

ConclusionThis methodology is simple and accurate as indicated by equal amplification efficiency throughout PCR cycling. It is also easily implemented for many existing protocols. In addition, parameters affecting RT linearity are characterized in this report.

Electronic supplementary materialThe online version of this article doi:10.1186-1472-6750-3-22 contains supplementary material, which is available to authorized users.

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Author: Yih-Horng Shiao

Source: https://link.springer.com/article/10.1186/1472-6750-3-22



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