A Graph Kernel incorporating molecules stereisomerism informationReport as inadecuate




A Graph Kernel incorporating molecules stereisomerism information - Download this document for free, or read online. Document in PDF available to download.

1 GREYC - Groupe de Recherche en Informatique, Image, Automatique et Instrumentation de Caen 2 Equipe Image - Laboratoire GREYC - UMR6072 GREYC - Groupe de Recherche en Informatique, Image, Automatique et Instrumentation de Caen 3 LCMT - Laboratoire de chimie moléculaire et thioorganique

Abstract : The prediction of molecule-s properties through Quantitative Structure Activity resp. Property Relationships are two active research fields named QSAR and QSPR. Within these frameworks Graph kernels allow to combine a natural encoding of a molecule by a graph with classical statistical tools such as SVM or kernel ridge regression. Unfortunately some molecules encoded by a same graph and differing only by the three dimensional orientations of their atoms in space have different properties. Such molecules are called stereoisomers. These latter properties can not be predicted by usual graph methods which do not encode stereoisomerism. In this paper we propose a new graph encoding of molecules taking explicitly into account stereoisomerism and propose a new kernel between these structures in order to predict properties related to stereoisomerism.





Author: Pierre-Anthony Grenier - Luc Brun - Didier Villemin -

Source: https://hal.archives-ouvertes.fr/



DOWNLOAD PDF




Related documents