Fine-grained parallelization of similarity search between protein sequences - Quantitative Biology > Quantitative MethodsReport as inadecuate




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Abstract: This report presents the implementation of a protein sequence comparisonalgorithm specifically designed for speeding up time consuming part on parallelhardware such as SSE instructions, multicore architectures or graphic boards.Three programs have been developed: PLAST-P, TPLAST-N and PLAST-X. They provideequivalent results compared to the NCBI BLAST family programs BLAST-P,TBLAST-N and BLAST-X with a speed-up factor ranging from 5 to 10.



Author: Van Hoa Nguyen IRISA, Dominique Lavenier IRISA

Source: https://arxiv.org/







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