Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3Report as inadecuate




Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3 - Download this document for free, or read online. Document in PDF available to download.

Standards in Genomic Sciences

, 10:99

First Online: 11 November 2015Received: 24 May 2014Accepted: 29 October 2015

Abstract

Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

KeywordsSyntrophic acetate oxidizing bacteria Acetogens Syntrophy Methanogens Hydrogen producer Methane production AbbreviationsSAOBSyntrophic acetate-oxidizing bacteria

DSMZDeutsche Sammlung für Mikroorganismen und Zellkulturen

MIRAMimicking Intelligent Read Assembly

MaGeMagnifying Genomes

BLASTPBasic local alignment search tool for proteins

NCBINational Center for Biotechnology Information

Electronic supplementary materialThe online version of this article doi:10.1186-s40793-015-0092-z contains supplementary material, which is available to authorized users.

Download fulltext PDF



Author: Shahid Manzoor - Bettina Müller - Adnan Niazi - Anna Schnürer - Erik Bongcam-Rudloff

Source: https://link.springer.com/







Related documents